Software Downloads: Omics.Pnl.Gov

Software 1-15 of 21 Pages: Go to 1 2 Next >> page
DanteR by omics.pnl.gov - DanteR allows users to perform various downstream data analysis, normalization, data reduction, and hypothesis testing steps.

DanteR 0.1.0 (http://omics.pnl.gov)

DanteR allows users to perform various downstream data analysis, normalization, data reduction, and hypothesis testing steps. DanteR includes a graphical environment for visualizing the data during the processing steps. DanteR can associate one or...

Program type: Freeware Size: 364.0 KBBy: omics.pnl.gov
Fasta File Comparer by omics.pnl.gov - Compares protein sequences from different Fasta files.

Fasta File Comparer 1.2.3913 (http://omics.pnl.gov)

Compares protein sequences from different Fasta files. FFasta File Comparer software will compare portions of the protein sequences in the source Fasta file with those in the comparison Fasta file and write the matching proteins and sequences to...

Program type: Freeware Size: 174.2 KBBy: omics.pnl.gov
Concatenated DTA to Mascot Generic File (MGF) File Converter by omics.pnl.gov - Mascot Generic Format (MGF) creator.

Concatenated DTA to Mascot Generic File (MGF) File Converter 1.2.3912 (http://omics.pnl.gov)

Mascot Generic Format (MGF) creator. Concatenated DTA to Mascot Generic File (MGF) File Converter is a command-line utility that reads in a _Dta.txt file and creates the equivalent Mascot Generic Format (MGF) file. _Dta.txt files are large text...

Program type: Freeware Size: 208.0 KBBy: omics.pnl.gov
Mascot Generic File (MGF) to .dta File Converter by omics.pnl.gov - Converts MGF files to DTA format.

Mascot Generic File (MGF) to .dta File Converter 1.1.3832 (http://omics.pnl.gov)

Converts MGF files to DTA format. Mascot Generic File (MGF) to .dta File Converter is a command-line utility that reads in a Mascot Generic Format (MGF) file and creates the equivalent _Dta.txt or .Dta files. Both formats (MGF and DTA) are common...

Program type: Freeware Size: 256.2 KBBy: omics.pnl.gov
X2XML by omics.pnl.gov - The X2XML software will read different mass spectrometry data files and create an mzXML file representation of the data (provided the proper vendor program is installed).

X2XML 1.3 (http://omics.pnl.gov)

The X2XML software will read different mass spectrometry data files and create an mzXML file representation of the data (provided the proper vendor program is installed). It is an extension of the ReAdW software to support the following file...

Program type: Freeware Size: 741.9 KBBy: omics.pnl.gov
MS File Info Scanner by omics.pnl.gov - MS File Info Scanner extracts information from MS data files.

MS File Info Scanner 1.1.3896 (http://omics.pnl.gov)

MS File Info Scanner extracts information from MS data files. Scan a series of MS data files (or data folders) and extract the acquisition start and end times, number of spectra, and the total size of the data, and saves the values in the file...

Program type: Freeware Size: 1.0 MBBy: omics.pnl.gov
Protein Coverage Summarizer by omics.pnl.gov - Determines the percent of the residues in proteins.

Protein Coverage Summarizer 1.3.3873 (http://omics.pnl.gov)

Determines the percent of the residues in proteins. Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been identified. The software requires two input files: the first should...

Program type: Freeware Size: 658.8 KBBy: omics.pnl.gov
MS Data File Trimmer by omics.pnl.gov - mzXML and mzData file processor.

MS Data File Trimmer 1.1.2991 (http://omics.pnl.gov)

mzXML and mzData file processor. MSDataFileTrimmer can be used to read an mzXML or mzData file, along with a text file containing scan numbers, and create a new mzXML or mzData file containing only the spectra for the specified scan numbers. This...

Program type: Freeware Size: 1.1 MBBy: omics.pnl.gov
Concatenated Text File Splitter by omics.pnl.gov - Concatenated Text File Splitter is a convenient utility for SEQUEST that splits concatenated files and re-creates individual files.

Concatenated Text File Splitter 1.1.3912 (http://omics.pnl.gov)

Concatenated Text File Splitter is a convenient utility for SEQUEST that splits concatenated files and re-creates individual files. When analyzing tandem mass spectral data files with SEQUEST or X!Tandem, we concatenate together separate spectra...

Program type: Freeware Size: 269.7 KBBy: omics.pnl.gov
Isotope Pattern Calculator by omics.pnl.gov - Calculates the isotopic distribution for peptides.

Isotope Pattern Calculator 1.0 Revision 4938 (http://omics.pnl.gov)

Calculates the isotopic distribution for peptides. Isotope Pattern Calculator calculates and displays the isotopic distribution and exact masses for peptides and other molecules. Users are given extensive control over the operation with options...

Program type: Freeware Size: 1.7 MBBy: omics.pnl.gov
Protein Digestion Simulator by omics.pnl.gov - Fasta file converter and validator.

Protein Digestion Simulator 2.2.3870 (http://omics.pnl.gov)

Fasta file converter and validator. Protein Digestion Simulator can be used to read a text file containing protein or peptide sequences (FASTA format or delimited text) then output the data to a tab-delimited file. It can optionally digest the...

Program type: Freeware Size: 574.3 KBBy: omics.pnl.gov
Amino Acid Residue Frequency Summarizer by omics.pnl.gov - Prepares statistics on the occurrence of each amino acid residue throughout a file containing peptide or protein sequences.

Amino Acid Residue Frequency Summarizer 1.2.3847 (http://omics.pnl.gov)

Prepares statistics on the occurrence of each amino acid residue throughout a file containing peptide or protein sequences. Residue Frequency Summarizer is a VB.NET command-line utility that reads in a text file or fasta file containing peptide or...

Program type: Freeware Size: 1.0 MBBy: omics.pnl.gov
Normalized Elution Time (NET) Prediction Utility by omics.pnl.gov - Compute predicted normalized elution time values for peptide sequences.

Normalized Elution Time (NET) Prediction Utility 2.2.3378 (http://omics.pnl.gov)

Compute predicted normalized elution time values for peptide sequences. The NET Prediction Utility can be used to compute predicted normalized elution time (NET) values for a list of peptide sequences. The elution times are intended for use with...

Program type: Freeware Size: 646.4 KBBy: omics.pnl.gov
PepAligner by omics.pnl.gov - Aligns peptides using Smith-Waterman alignment.

PepAligner 1.0.2895 (http://omics.pnl.gov)

Aligns peptides using Smith-Waterman alignment. PepAligner software can read a file containing peptides and align them to a file of protein sequences (.Fasta or delimited text) using Smith-Waterman alignment. The output file will show the original...

Program type: Freeware Size: 172.5 KBBy: omics.pnl.gov
Uniprot DAT File Parser by omics.pnl.gov - Parses Uniprot files.

Uniprot DAT File Parser 1.0.3608 (http://omics.pnl.gov)

Parses Uniprot files. Uniprot DAT File Parser can read a Uniprot (IPI) .Dat file and parse out the information for each entry, creating a tab delimited text file.This software must be run from the command line. To use, first download the .Dat file...

Program type: Freeware Size: 335.9 KBBy: omics.pnl.gov
Software 1-15 of 21 Pages: Go to 1 2 Next >> page