SAM tools

Manage SAM files with this software. SSAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that:1.

SAM tools 0.1.9
Publisher: License: Freeware
Version: 0.1.9 Date Added: 2 November, 2012
File Size: 341.3 KB Downloads: 15
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Systems: Windows


Manage SAM files with this software. SSAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that:1. Is flexible enough to store all the alignment information generated by various alignment programs;2. Is simple enough to be easily generated by alignment programs or converted from existing alignment formats;3. Is compact in file size;4. Allows most of operations on the alignment to work on a stream without loading the whole alignment into memory;5. Allows the file to be indexed by genomic position to efficiently retrieve all reads aligning to a locus.SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

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File Size: 341.3 KB